rs27371918 SNP Detail

Summary

• ID
  rs27371918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152609639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATCTGC ATACCAACCA
  TGTCCCAGGC TCTGGGGCAC AGCCAATGAG ATAGCCGACT AGGATAGTTA ACTCTGGTAT
  TGTGAATCTG AAAGTCTGGC CTAGGAAAAG GAACGTTAAC CAGATGGCCA GTCTAGTAAA
  CCAGCGTACA GAGGGGTACC AATAAAGAAG CCAAGTGGTA TTTGGATGGC CAATCAGGGG
  Y
  TTAGTCCAGA GGGCTTCCCT GAGGAAGTGT TGTCCATTAT GACGGATGAC CAGATGTAAG
  CTCAGTCAAA GAGGCTAGGT AGAGAGAGGC AGGGTAAAGG CCCCCTGGTG GTGAGGTCTA
  TTATATGTTT GGGACATAGA GGCAGCCAGT AGGAACAGAA GAGACAGAAC AAGAAAGGCG
  GGAGCAGACA GTCCTCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37561743	NES08907110	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27371918					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561743	NES08907110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152609639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12465	CpG island 12465	890 bp distal
Rr567460	regulatory region 567460	637 bp distal
Rr567461	regulatory region 567461	1031 bp distal
Rr567462	regulatory region 567462	within coordinates
Rr567463	regulatory region 567463	1887 bp proximal