rs27371919 SNP Detail

Summary

• ID
  rs27371919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152609493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGATCA CAAACGTGCT
  CCGCCACTCC TGGCACTTGA ACAAGCCTTC TGAAGACAGA TCTGAGGGGT GTACCTCCAC
  TCACACCCTG AAATGTCAGA GGAAGGATTT AGGGAAACAG TAACAGCAAC GATATTCATT
  CAACCAATAA ATCTGCATAC CAACCATGTC CCAGGCTCTG GGGCACAGCC AATGAGATAG
  Y
  CGACTAGGAT AGTTAACTCT GGTATTGTGA ATCTGAAAGT CTGGCCTAGG AAAAGGAACG
  TTAACCAGAT GGCCAGTCTA GTAAACCAGC GTACAGAGGG GTACCAATAA AGAAGCCAAG
  TGGTATTTGG ATGGCCAATC AGGGGCTTAG TCCAGAGGGC TTCCCTGAGG AAGTGTTGTC
  CATTATGACG GATGACCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37561744	NES08907108	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		C	C	C	C	C	T	C
ss45355054	mCV27575156	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss147974129	ENSMUSSNP6924816	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27371919					SNP	C	T	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561744	NES08907108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152609493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12465	CpG island 12465	744 bp distal
Rr567459	regulatory region 567459	1897 bp distal
Rr567460	regulatory region 567460	491 bp distal
Rr567461	regulatory region 567461	885 bp distal
Rr567462	regulatory region 567462	within coordinates