rs27371922 SNP Detail

Summary

• ID
  rs27371922
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152608515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATGGAT GTGGAGAAGT
  TGCGTGGGTG CTCGGCCACA GCTGTTCTTA GTTACTGGGC TGCAGGACAA CCGCAGCTGC
  AGGGACTGAG GCCGGTGGCC GATGGAACGA GGGCATCTGT TGATGTGAGG TTCAACGTGG
  GGGAGCCTCT ACCCCGGGAG AACTGCAGGG GGCCTCGAGG GCGCTGACAA CTACTCAGCT
  M
  TGCGGCTGGG ATGGTGATCT AGACTAGATG GACACACACA GGCAAGGAAC TTTCTGCCCA
  CCGTGCTCTC GCCGGCGCCC TCTACCGGCA AAACTCGGCA TCATCTCCTG AGTGCAGGTC
  CGACGTTGAA CTACAGGAGG CCCACCAGGA TGAGGAAAAT AGCCCGTTTC TCTCTCTCCC
  CTCCCCCTCT CCTCTCCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37561747	NES08907182	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27371922					SNP	C	A	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561747	NES08907182	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152608515 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	1558 bp downstream
Cpgi12465	CpG island 12465	within coordinates
Rr567459	regulatory region 567459	919 bp distal
Rr567460	regulatory region 567460	within coordinates
Rr567461	regulatory region 567461	72 bp proximal
Rr567462	regulatory region 567462	900 bp proximal
Tssr26855	transcription start site region 26855	1221 bp upstream