rs27371923 SNP Detail

Summary

• ID
  rs27371923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152608476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGTGCT CTCTTCTGTG
  CTGGGGGATG GTTTCTTAGG AGAATGGATG TGGAGAAGTT GCGTGGGTGC TCGGCCACAG
  CTGTTCTTAG TTACTGGGCT GCAGGACAAC CGCAGCTGCA GGGACTGAGG CCGGTGGCCG
  ATGGAACGAG GGCATCTGTT GATGTGAGGT TCAACGTGGG GGAGCCTCTA CCCCGGGAGA
  R
  CTGCAGGGGG CCTCGAGGGC GCTGACAACT ACTCAGCTCT GCGGCTGGGA TGGTGATCTA
  GACTAGATGG ACACACACAG GCAAGGAACT TTCTGCCCAC CGTGCTCTCG CCGGCGCCCT
  CTACCGGCAA AACTCGGCAT CATCTCCTGA GTGCAGGTCC GACGTTGAAC TACAGGAGGC
  CCACCAGGAT GAGGAAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37561748	NES08907178	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27371923					SNP	A	G	A	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561748	NES08907178	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152608476 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	1519 bp downstream
Cpgi12465	CpG island 12465	within coordinates
Rr567459	regulatory region 567459	880 bp distal
Rr567460	regulatory region 567460	within coordinates
Rr567461	regulatory region 567461	111 bp proximal
Rr567462	regulatory region 567462	939 bp proximal
Tssr26855	transcription start site region 26855	1182 bp upstream