rs27371925 SNP Detail

Summary

• ID
  rs27371925
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152608049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCCCAC TAGATTGTGT
  TCCAAGCAGG ATGGGGTAGC GTCGGTGTTT GGGTCGTCCA AGGAAAGGAT GCTAAGAAGG
  AATTAGTCAT ATGAGATTTG AGGGCAATGA TTGTGCGGGA TGGAGCTGGA GGGAATGATA
  GTCCCTTAGT CTGACACCTG GGGTGGGTGG AGACCCAGAG CACTGGAGGT GGGGCATCCT
  K
  AAACCCAGGG TCTCTACACA GTGGTTTAAA TAGGCTGATT GGGCAGGGAA TGCGGCTACT
  GAGCATGTAC AAGACCCTGG GTTCAACTTC TAGTATTCCC CCCAAAAGAA ACAAAACAAA
  ACAAAGAAAC AAAAAACAAC CGGGGTCTGA TTAATACAGA AAAGATCACG CTTACACAGG
  AAGGTAACAA GTAGACACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37561750	NES08907172	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	T		G		T	T	T	G	G	T
ss45233060	mCV27575123	ABI	CRAMUS_MOUSE	f	SNP		T	G					T		T
ss147974109	ENSMUSSNP916559	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27371925					SNP	T	T	G	T	T	T	T	T	G	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561750	NES08907172	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152608049 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	1092 bp downstream
Cpgi12465	CpG island 12465	333 bp proximal
Rr567459	regulatory region 567459	453 bp distal
Rr567460	regulatory region 567460	189 bp proximal
Rr567461	regulatory region 567461	538 bp proximal
Rr567462	regulatory region 567462	1366 bp proximal
Tssr26855	transcription start site region 26855	755 bp upstream