rs27371926 SNP Detail

Summary

• ID
  rs27371926
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152607381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATACCTA ATAGTAAGAT
  CCCAGGCTCG GGGGATGCTG CAGTATATAT GACCAAGTCC TTGGCTTCAC AGAGGAGACC
  TTTCTTCTGT GGAGGCCAAT AGAGTGAATA ATAAATAATG GAGAGAAATA TTGTGTTGTG
  GGAGACAAGT GCCACAAAGC AGGCTAAGAG GAGTCTGGGA AGCAGGTGAA GAGTCTCTTA
  W
  GGGAAGTGGC TCTTCTGAAG AGGGCAGAGT GGAATCAGGG AGGAAGCCTT GAATGGAGGG
  TGGAGGGTGG GTAGCTTGTG GAACCTCTCT TAAGTGTGTG TGAGATCCGG AGTTTCATCT
  CTGGCATTAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACGAAAAGGA
  AAAAGAAGCT TGCCTGTGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37561751	NES08907208	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	A		A		A	A	A	T	T	A
ss45353557	mCV27575111	ABI	CRAMUS_MOUSE	f	SNP		T					A		A
ss147974094	ENSMUSSNP6211373	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27371926					SNP	A	T	A	A	A	A	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561751	NES08907208	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152607381 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	424 bp downstream
Cpgi12465	CpG island 12465	1001 bp proximal
Rr567459	regulatory region 567459	within coordinates
Rr567460	regulatory region 567460	857 bp proximal
Rr567461	regulatory region 567461	1206 bp proximal
Tssr26855	transcription start site region 26855	87 bp upstream