rs27371927 SNP Detail

Summary

• ID
  rs27371927
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152607361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTTTCT TGAGCACCCA
  TGCATACCTA ATAGTAAGAT CCCAGGCTCG GGGGATGCTG CAGTATATAT GACCAAGTCC
  TTGGCTTCAC AGAGGAGACC TTTCTTCTGT GGAGGCCAAT AGAGTGAATA ATAAATAATG
  GAGAGAAATA TTGTGTTGTG GGAGACAAGT GCCACAAAGC AGGCTAAGAG GAGTCTGGGA
  M
  GCAGGTGAAG AGTCTCTTAA GGGAAGTGGC TCTTCTGAAG AGGGCAGAGT GGAATCAGGG
  AGGAAGCCTT GAATGGAGGG TGGAGGGTGG GTAGCTTGTG GAACCTCTCT TAAGTGTGTG
  TGAGATCCGG AGTTTCATCT CTGGCATTAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACGAAAAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37561752	NES08907207	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27371927					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561752	NES08907207	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152607361 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	404 bp downstream
Cpgi12465	CpG island 12465	1021 bp proximal
Rr567459	regulatory region 567459	within coordinates
Rr567460	regulatory region 567460	877 bp proximal
Rr567461	regulatory region 567461	1226 bp proximal
Tssr26855	transcription start site region 26855	67 bp upstream