rs27371928 SNP Detail

Summary

• ID
  rs27371928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152607142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCTTGC AAACTCCCCT
  TTGGACTATC TGTTATCTAA ATTTAACCAT TGAGATGGGG GGGGGGGGCG CGGAGGCAGG
  AACAAATCAT GAAGGGTCTC CTGGAGAAGT GGGTTGGGGC TGGGCATTAG GCAGGATGGG
  GGGAAAGACA GGACGGAGAA GAGAAGGCAT TCAAGGGAGG CAGTTCAAAG GCAAAAGCAC
  Y
  CTTATTCAGT CAATTAACAA ATCTTTCTTG AGCACCCATG CATACCTAAT AGTAAGATCC
  CAGGCTCGGG GGATGCTGCA GTATATATGA CCAAGTCCTT GGCTTCACAG AGGAGACCTT
  TCTTCTGTGG AGGCCAATAG AGTGAATAAT AAATAATGGA GAGAAATATT GTGTTGTGGG
  AGACAAGTGC CACAAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37561753	NES08907237	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	C		T	T	C	C	C	T
ss45302070	mCV27575110	ABI	CRAMUS_MOUSE	f	SNP		C						T
ss147974089	ENSMUSSNP4948018	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27371928					SNP	T	C	T	T	T	T	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561753	NES08907237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152607142 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	185 bp downstream
Cpgi12465	CpG island 12465	1240 bp proximal
Rr567459	regulatory region 567459	within coordinates
Rr567460	regulatory region 567460	1096 bp proximal
Rr567461	regulatory region 567461	1445 bp proximal
Tssr26855	transcription start site region 26855	137 bp downstream