rs27371929 SNP Detail

Summary

• ID
  rs27371929
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152606810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCGGCC ACGGAGACCC
  GGGCTGTCAC TGTCTCACCC TTGCCCTCCC TGCAGTGTTC CCTAAGAAGG TTGTCACCCT
  GACGGAAGAA CGGAAAGCCC AACAGCTCCA GCGCCTCCTG GACATGAAGA GCAACCCCAT
  ACAGGGCCTG GCTGCCCACT GGGATTATGA AAAGAAGGAG TGGAAAAAGT GACCAACGTC
  M
  CACGTCTGCC GCCAGCCCCT GCAAACTGCT TCTGCAGCCC AGGAGACAAT CATCCCCTCC
  CCTCCCCTCC CCTCCCTCCT CCTCCTGAGT CCTGTCTCCA CTCCCTTCTC CAATAAAAGC
  AGCCTGCTTT GTTCTGCTTG CAAACTCCCC TTTGGACTAT CTGTTATCTA AATTTAACCA
  TTGAGATGGG GGGGGGGGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37561754	NES08907236	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	C	A	C	C	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27371929					SNP	C	A	C	C	C	C	A	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561754	NES08907236	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152606810 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	within coordinates
Cpgi12465	CpG island 12465	1572 bp proximal
D2Wsu107e	DNA segment, Chr 2, Wayne State University 107, expressed	1681 bp distal
Rr567459	regulatory region 567459	within coordinates
Rr567460	regulatory region 567460	1428 bp proximal
Rr567461	regulatory region 567461	1777 bp proximal
Tssr26855	transcription start site region 26855	469 bp downstream