rs27372041 SNP Detail

Summary

• ID
  rs27372041
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152538169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCG GTGGGAATCC AGACTCGTCT
  M
  GGGGAGGCAG GCCAGGTCAC AGCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37561867	NES08908843	PERLEGEN	MM_PANEL2	f	SNP	A	A	C		C	A	C
ss320563186	CHEV_2_152521985	CHEVERUD	SCREENING_POP	f	SNP				C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs27372041					SNP	A	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561867	NES08908843	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152538169 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			within coordinates
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567434	regulatory region 567434			1127 bp distal
Rr567435	regulatory region 567435			within coordinates
Rr567436	regulatory region 567436			424 bp proximal
Rr567437	regulatory region 567437			693 bp proximal
Tssr20823	transcription start site region 20823			1236 bp downstream
Tssr20824	transcription start site region 20824			773 bp downstream
Tssr20825	transcription start site region 20825			731 bp downstream