rs27372049 SNP Detail

Summary

• ID
  rs27372049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152537033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCC TCAAACTTAC ATTCTGTGGC
  Y
  ATAACCTAGA GCCACCTTTT TTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37561875	NES08908835	PERLEGEN	MM_PANEL2	f	SNP		T	T	C			C	T	T	C
ss147972018	ENSMUSSNP1226213	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
ss320563180	CHEV_2_152520849	CHEVERUD	SCREENING_POP	f	SNP						C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27372049					SNP	C	T	T	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561875	NES08908835	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152537033 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			132 bp downstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567432	regulatory region 567432			1262 bp distal
Rr567433	regulatory region 567433			1672 bp distal
Rr567434	regulatory region 567434			within coordinates
Rr567435	regulatory region 567435			1041 bp proximal
Rr567436	regulatory region 567436			1560 bp proximal
Rr567437	regulatory region 567437			1829 bp proximal
Tssr20823	transcription start site region 20823			100 bp downstream
Tssr20824	transcription start site region 20824			345 bp upstream
Tssr20825	transcription start site region 20825			394 bp upstream