rs27372053 SNP Detail

Summary

• ID
  rs27372053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152536753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCAGACA GATTCTCATT
  CCACCTGCAT TCTGAAGTTT GAAGCCCAAC CCCAGCAAAC CCCCGACGCT GCTGACCAAA
  AAAAAAAAAA GAAAAAAAAA AAAAGAAAAT TCCTTTTATC TGAGATTGGT ATTTGTAGCT
  CTGTGCCCTT GGCGGCCAGT CTGACCTTGT AAACCTCAAT CTCATATCCA TGGTGGTAAA
  Y
  AAGAGTTCCC TCTCGGGTCT GCTGTGCCAA GTCGGGCAGA GCACTGAGCA CAGGCTGACC
  TCAGTGGTAG GGAAAGCCAG CTGCAGCCCG TCTTTGTCAG GCTGGACTTG AGCCACTGCA
  TTCAGGTCTA GCTGTTCCCT GAGGTCTCCC TCCTCGGGCT CTTTTCAGAC TGTCGCAGAA
  GCTAAGCATA AGGCTGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37561879	NES08908831	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27372053					SNP	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561879	NES08908831	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152536753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			412 bp downstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567432	regulatory region 567432			982 bp distal
Rr567433	regulatory region 567433			1392 bp distal
Rr567434	regulatory region 567434			within coordinates
Rr567435	regulatory region 567435			1321 bp proximal
Rr567436	regulatory region 567436			1840 bp proximal
Tssr20823	transcription start site region 20823			153 bp upstream
Tssr20824	transcription start site region 20824			625 bp upstream
Tssr20825	transcription start site region 20825			674 bp upstream