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rs27372059 SNP Detail
Summary
  • ID
    rs27372059
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:152535898 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCGCACACGG AGGTTGGACT
    GGCTAGCTGT GTCTCGGGGA CTCTGGAGGC TGGGGCACCT GGCCTTGGTT TTGAAGTGTG
    GCTCGGGTGC TAAGGGACAC AGTTAGCATT CCTGGGCTCC TGTGGTACTT TCCAGTGATG
    GCTTCCAGCT CCAGCCCTCC ACCTCCTGCC CGGCAGCAGC CACAGGGCTC TTTCTGGACC
    R
    GTTTAGGCGC TTCTCCTCCC AGAATGCTCC CCGCATATCA TGTTCCTTAC TCGGAATGTA
    GACCCACCCG GGCCTGCTGC GTGACCATTC TATGCCATGT CTCCCTCCTC CACGTGCAGC
    CATACTAGTT CCTCAGAACA TGTTTTCCAC TCTCCCTGGC CTGTGTAACT TTAAAGAAGC
    CCTCTTCAGG CTAGGCCCCA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
CAST/EiJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss37561885 NES08908825 PERLEGEN MM_PANEL2 f SNP G G G G G G A
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
CAST/EiJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs27372059 SNP G G G G G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37561885 NES08908825 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:152535898 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm75645 predicted gene, 75645 1267 bp downstream
H13 histocompatibility 13 Intron
Noncoding-Transcript-Variant
Rr567430 regulatory region 567430 1760 bp distal
Rr567431 regulatory region 567431 1861 bp distal
Rr567432 regulatory region 567432 127 bp distal
Rr567433 regulatory region 567433 537 bp distal
Rr567434 regulatory region 567434 755 bp proximal
Tssr20823 transcription start site region 20823 1008 bp upstream
Tssr20824 transcription start site region 20824 1480 bp upstream
Tssr20825 transcription start site region 20825 1529 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory