GCGCACACGG AGGTTGGACT GGCTAGCTGT GTCTCGGGGA CTCTGGAGGC TGGGGCACCT GGCCTTGGTT TTGAAGTGTG GCTCGGGTGC TAAGGGACAC AGTTAGCATT CCTGGGCTCC TGTGGTACTT TCCAGTGATG GCTTCCAGCT CCAGCCCTCC ACCTCCTGCC CGGCAGCAGC CACAGGGCTC TTTCTGGACC R GTTTAGGCGC TTCTCCTCCC AGAATGCTCC CCGCATATCA TGTTCCTTAC TCGGAATGTA GACCCACCCG GGCCTGCTGC GTGACCATTC TATGCCATGT CTCCCTCCTC CACGTGCAGC CATACTAGTT CCTCAGAACA TGTTTTCCAC TCTCCCTGGC CTGTGTAACT TTAAAGAAGC CCTCTTCAGG CTAGGCCCCA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
CAST/EiJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37561885 | NES08908825 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A |
SNP Consensus Information | ||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
CAST/EiJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
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rs27372059 | SNP | G | G | G | G | G | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37561885 | NES08908825 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:152535898 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm75645 | predicted gene, 75645 | 1267 bp downstream | ||||||
H13 | histocompatibility 13 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr567430 | regulatory region 567430 | 1760 bp distal | ||||||
Rr567431 | regulatory region 567431 | 1861 bp distal | ||||||
Rr567432 | regulatory region 567432 | 127 bp distal | ||||||
Rr567433 | regulatory region 567433 | 537 bp distal | ||||||
Rr567434 | regulatory region 567434 | 755 bp proximal | ||||||
Tssr20823 | transcription start site region 20823 | 1008 bp upstream | ||||||
Tssr20824 | transcription start site region 20824 | 1480 bp upstream | ||||||
Tssr20825 | transcription start site region 20825 | 1529 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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