rs27372061 SNP Detail

Summary

• ID
  rs27372061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152535462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCATGTT GAAATCCCCT
  CAGCTGCCAG GTTAGCAGAG CCCCTGCCCC TGCTTCAGTT GGAAAGCTGT TACAGGTGTC
  GGTCACCAGG GGGCGCTAAG CCCCAAACAC TGTAGAAAAG GCAACTCTAG GCCGCTTTCT
  CCACCCGTCT CTCCTCTCCG ACTCGGTTTC CTTCTTTAAA TTAATGACTT GAGGTGGGGC
  Y
  CTTAATTCCG TGATAGAGAG AGCCCTTGCC TGGCATGTAT AATTGCGGGC CTGAGTTCCA
  AAGGCAGCAT TGTAAAAATA TCTACTGGTC ATGCTTGCTA GTTGTTGATG CTTTTGATGG
  ACACAGAACG TTTCAGCTCT TGAGAGGTTG CCCTCAGCTA AGTGAGACTC AGTCTCTGTC
  CTGTGTTTGC CCGAAAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37561887	NES08908823	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27372061					SNP	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561887	NES08908823	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152535462 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			1703 bp downstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567430	regulatory region 567430			1324 bp distal
Rr567431	regulatory region 567431			1425 bp distal
Rr567432	regulatory region 567432			within coordinates
Rr567433	regulatory region 567433			101 bp distal
Rr567434	regulatory region 567434			1191 bp proximal
Tssr20823	transcription start site region 20823			1444 bp upstream
Tssr20824	transcription start site region 20824			1916 bp upstream
Tssr20825	transcription start site region 20825			1965 bp upstream