rs27372063 SNP Detail

Summary

• ID
  rs27372063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152535276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC CTGAGAGCAG CATGTTGAAA
  Y
  CCCCTCAGCT GCCAGGTTAG CAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37561889	NES08908821	PERLEGEN	MM_PANEL2	f	SNP			T	T		C			C	T	T	C
ss45244209	mCV27576178	ABI	CRAMUS_MOUSE	f	SNP	C	C	T		T		C
ss147971968	ENSMUSSNP6541663	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				C
ss320563171	CHEV_2_152519092	CHEVERUD	SCREENING_POP	f	SNP								C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27372063					SNP	C	C	T	T	T	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561889	NES08908821	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152535276 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			1889 bp downstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567430	regulatory region 567430			1138 bp distal
Rr567431	regulatory region 567431			1239 bp distal
Rr567432	regulatory region 567432			within coordinates
Rr567433	regulatory region 567433			64 bp proximal
Rr567434	regulatory region 567434			1377 bp proximal
Tssr20823	transcription start site region 20823			1630 bp upstream