rs27372846 SNP Detail

Summary

• ID
  rs27372846
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150461572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCTGAG CCCCAGGAGA
  AAGAAAAAGG GGCTTCAGCT TCAAATAGGG CAGTAGATGG GTCATGTGTT CGGAAGAAAC
  AAGCCACTTT TGAAGTTGCT TCCCCTGAGG ACGTCCAGGG GTCCTGTGCA GCCTTGTCTG
  AACAACACAG AGGCACACCT CTCAGTTGGT AGCAGCCCGC TGCTCTTCAT ACTTCTGGAA
  S
  GCACTCAAGA TTTCTGTGAT GACGCTGGGG TCCTCCAGGG TAGTGGTGTC CCCTAGATCC
  TGTCCCCTGC TGGTGATGAT CTTCCTCAGT AGTCTCCTCA TCACTTTCCC AGATCTGGTT
  TTGGGGAGAC GCTTCACCAC CTGGCAAAGA TGAGTGGTGT TAGGGTCTGG GCAGCGCCCT
  CTGACACAGT GACTGGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568768	NES08923962	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372846					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568768	NES08923962	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150461572 () rs orientation: forward

Symbol	Name	Function Class
Acss1	acyl-CoA synthetase short-chain family member 1	within coordinates
Gm52532	predicted gene, 52532	within coordinates
Tssr26710	transcription start site region 26710	280 bp upstream