rs27372848 SNP Detail

Summary

• ID
  rs27372848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150461491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCTGGC TTAGTGCCAA
  TTATGACTTG ATTCTGGAAA CCAGATGTAT GACAAAGGCC TTCCCCCAGC CTCCAGAAGC
  AGCCCTCTGA GCCCCAGGAG AAAGAAAAAG GGGCTTCAGC TTCAAATAGG GCAGTAGATG
  GGTCATGTGT TCGGAAGAAA CAAGCCACTT TTGAAGTTGC TTCCCCTGAG GACGTCCAGG
  R
  GTCCTGTGCA GCCTTGTCTG AACAACACAG AGGCACACCT CTCAGTTGGT AGCAGCCCGC
  TGCTCTTCAT ACTTCTGGAA GGCACTCAAG ATTTCTGTGA TGACGCTGGG GTCCTCCAGG
  GTAGTGGTGT CCCCTAGATC CTGTCCCCTG CTGGTGATGA TCTTCCTCAG TAGTCTCCTC
  ATCACTTTCC CAGATCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37568770	NES08923960	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G	G	A	G
ss147949710	ENSMUSSNP5032753	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27372848					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568770	NES08923960	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150461491 () rs orientation: forward

Symbol	Name	Function Class
Acss1	acyl-CoA synthetase short-chain family member 1	within coordinates
Gm52532	predicted gene, 52532	within coordinates
Tssr26710	transcription start site region 26710	199 bp upstream