rs27372850 SNP Detail

Summary

• ID
  rs27372850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150461429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTATCT AAACACATCT
  GGAGAAAGCA TGACAGTTTT GGAGCTAAGA CCTCTGGTCA CCCTGTGCTG GCTTAGTGCC
  AATTATGACT TGATTCTGGA AACCAGATGT ATGACAAAGG CCTTCCCCCA GCCTCCAGAA
  GCAGCCCTCT GAGCCCCAGG AGAAAGAAAA AGGGGCTTCA GCTTCAAATA GGGCAGTAGA
  Y
  GGGTCATGTG TTCGGAAGAA ACAAGCCACT TTTGAAGTTG CTTCCCCTGA GGACGTCCAG
  GGGTCCTGTG CAGCCTTGTC TGAACAACAC AGAGGCACAC CTCTCAGTTG GTAGCAGCCC
  GCTGCTCTTC ATACTTCTGG AAGGCACTCA AGATTTCTGT GATGACGCTG GGGTCCTCCA
  GGGTAGTGGT GTCCCCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568772	NES08923956	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	T	C	C	C	T
ss147949690	ENSMUSSNP5965124	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372850					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568772	NES08923956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150461429 () rs orientation: forward

Symbol	Name	Function Class
Acss1	acyl-CoA synthetase short-chain family member 1	within coordinates
Gm52532	predicted gene, 52532	within coordinates
Tssr26710	transcription start site region 26710	137 bp upstream