rs27372852 SNP Detail

Summary

• ID
  rs27372852
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150461258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCATTCT GTTATCTTCA
  TCCCTGGGGA GGTAAGAAGG GAGATTCTTC CCACGGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTAACTAAA TGTTCACATT ATACTCAAAT GTTCTGCTAT TCTCCCCAAA
  TAGAAAAAGT ACAAAAAAAA AATAATTTGT GTTTTGTATC TAAACACATC TGGAGAAAGC
  M
  TGACAGTTTT GGAGCTAAGA CCTCTGGTCA CCCTGTGCTG GCTTAGTGCC AATTATGACT
  TGATTCTGGA AACCAGATGT ATGACAAAGG CCTTCCCCCA GCCTCCAGAA GCAGCCCTCT
  GAGCCCCAGG AGAAAGAAAA AGGGGCTTCA GCTTCAAATA GGGCAGTAGA TGGGTCATGT
  GTTCGGAAGA AACAAGCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568774	NES08923952	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372852					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568774	NES08923952	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150461258 () rs orientation: forward

Symbol	Name	Function Class
Acss1	acyl-CoA synthetase short-chain family member 1	within coordinates
Gm52532	predicted gene, 52532	within coordinates
Tssr26710	transcription start site region 26710	9 bp downstream