About   Help   FAQ
rs27372903 SNP Detail
Summary
  • ID
    rs27372903
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:150451880 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTGGGAGGC TCTGTGAACA
    TTCCTGAGCT GTCACAAGTA GCCAGTTACA TCCAGTGCCT GTTACATGGA TTATGCGTAT
    CCTATGCCCA GTGTGAAACA CATGGGCCAA AACAACCCGG AACACACACA CGAAGAATAA
    AAAAGAGTTG AATACACTGA ACTTCCTACA TAAAAGGAAT TCACCAGACG ACCTGTGAGC
    Y
    CCTCAGTTAT GGAAGACTGT TCATGAAATT CAGGGCTAAA GTTAGAAATG GTCTTGGAAC
    GGATCGGTTA GAGTTTGTAA ACTAGGAAAG TGTCTGGAAG AGCCAGTGGC CATATCTCTA
    AAACAAATAA GTCCACAGGG AATTGCTGGG AGATACACTC ATGGCCTTAT CTTGAAGCAC
    ATGAGTCTGA ATAAGCTGGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37568826 NES08924407 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27372903 SNP T T T T T T C T T T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37568826 NES08924407 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:150451880 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Apmap adipocyte plasma membrane associated protein 1393 bp upstream
Cpgi12408 CpG island 12408 1172 bp distal
Gm14123 predicted gene 14123 within coordinates
Rr397381 regulatory region 397381 1201 bp downstream
Rr567053 regulatory region 567053 903 bp distal
Rr567054 regulatory region 567054 1342 bp distal
Rr567055 regulatory region 567055 571 bp distal
Rr567056 regulatory region 567056 90 bp proximal
Tssr26708 transcription start site region 26708 1459 bp upstream
Tssr26709 transcription start site region 26709 1399 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
07/22/2025
MGI 6.24
The Jackson Laboratory