rs27372906 SNP Detail

Summary

• ID
  rs27372906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150451628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATTGAAG ACAGACATTA
  TAAAGATAAT ATCGTGGGTA ATTGTAACAA CTGCTGTGTG GGTCTGGCGC CTACCTGGAG
  ACCTGAATGG CTTCCCCTTC TGATTGCATG TCTCTGACTT TGTCATGTTA CTCCTTGTTT
  CCTTGTGATA CGTTTTTTTT TCTACCTCCA CCTAAACCAC TTTTATCATC CAGAATCCAT
  Y
  TCAAGAGTCA TTGCTGAAAA TCTCTCATTA ACTCTCCAGA GTATCCCCGT CTGTGGGAGG
  CTCTGTGAAC ATTCCTGAGC TGTCACAAGT AGCCAGTTAC ATCCAGTGCC TGTTACATGG
  ATTATGCGTA TCCTATGCCC AGTGTGAAAC ACATGGGCCA AAACAACCCG GAACACACAC
  ACGAAGAATA AAAAAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568829	NES08924404	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372906					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568829	NES08924404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150451628 () rs orientation: forward

Symbol	Name	Function Class
Apmap	adipocyte plasma membrane associated protein	1141 bp upstream
Cpgi12408	CpG island 12408	920 bp distal
Gm14123	predicted gene 14123	within coordinates
Rr397381	regulatory region 397381	949 bp downstream
Tssr26708	transcription start site region 26708	1207 bp upstream
Tssr26709	transcription start site region 26709	1147 bp upstream