rs27372909 SNP Detail

Summary

• ID
  rs27372909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150451497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAAGGCTT GGCAACATGG TACTTGATTC CATCATTGAA
  GACAGACATT ATAAAGATAA TATCGTGGGT AATTGTAACA ACTGCTGTGT GGGTCTGGCG
  Y
  CTACCTGGAG ACCTGAATGG CTTCCCCTTC TGATTGCATG TCTCTGACTT TGTCATGTTA
  CTCCTTGTTT CCTTGTGATA CGTTTTTTTT TCTACCTCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568832	NES08924401	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372909					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568832	NES08924401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150451497 () rs orientation: forward

Symbol	Name	Function Class
Apmap	adipocyte plasma membrane associated protein	1010 bp upstream
Cpgi12408	CpG island 12408	789 bp distal
Gm14123	predicted gene 14123	within coordinates
Rr397381	regulatory region 397381	818 bp downstream
Rr567053	regulatory region 567053	520 bp distal
Rr567054	regulatory region 567054	959 bp distal
Rr567055	regulatory region 567055	188 bp distal
Rr567056	regulatory region 567056	473 bp proximal
Tssr26708	transcription start site region 26708	1076 bp upstream
Tssr26709	transcription start site region 26709	1016 bp upstream