rs27372916 SNP Detail

Summary

• ID
  rs27372916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150450889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTTGCA AAGAGAAGAT
  GCCACTGATT CTTAACGAAA TGTGTTCAAT GCAGTAATCC CCGCCTGAAC TGTTATCTTT
  TCTGAAAAGA TTCCGCTAAA GTTCAAAATG TGTCCTTTTG GTTAAGATCA GATTTTGACT
  GCTAGATCGT CAAGTGGTTA TACAATAGAC ATTTGATAAA TTTTCTAAAG GGAGTTACCT
  R
  AAGACAGGCC CAAGTAGAAA AGACTGCTAA TAGCAAAACT TTAGGAATCA TGAAGCAACC
  ACCAGGTAGT GCTTCCACGG TATTACAGCG AGTCGGACAT ACTCCAGGAG GTGAAGTGAG
  CAGACTGCAG GCAAATCCCT CCTTTCTGGA ACTAATGAGA GCCATGACTT CAATACATGT
  AAATTTTAAT ACAGTGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568839	NES08910377	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372916					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568839	NES08910377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150450889 () rs orientation: forward

Symbol	Name	Function Class
Apmap	adipocyte plasma membrane associated protein	402 bp upstream
Cpgi12408	CpG island 12408	181 bp distal
Gm14123	predicted gene 14123	within coordinates
Rr397381	regulatory region 397381	210 bp downstream
Tssr26708	transcription start site region 26708	468 bp upstream
Tssr26709	transcription start site region 26709	408 bp upstream