rs27372920 SNP Detail

Summary

• ID
  rs27372920
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150450252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTATCAGA GGTTCCAACA
  AGGACAAGTC GGGAAGATGC GTGCAACTAA AGAAAGGCAA AAGGCGTTGG CTCCAGCGGC
  TGGGTGGCAA GAAGGGACAG AAAAGGTCCA CAGCAGCGTG AGGGAGGACA ACCAGGTCCA
  CGCAAGGCCT CGCCCCGCAG ATTGTCCTGT CAGCCCGAAC CCGGCTCCTG GGTCCAAGCC
  S
  GGATAATGAG GAGGGTTCTC TCCCGTGGGA TGATCCCAGC CCAGGTCCTG CCTACCTGCC
  CTCCTTGACC TCCGGGACCT GGCCATCGTC CGTGACGACC TGCGGCCGCA GGGGCCGACG
  CTGCCGCAGC CCGTCCGCTT CGCTCATTCT GCCGCCTCTC CACTGACACC TCCAACAGCG
  CCTTGACACT CAGCAACGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568843	NES08910368	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372920					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568843	NES08910368	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150450252 () rs orientation: forward

Symbol	Name	Function Class
Apmap	adipocyte plasma membrane associated protein	within coordinates
Cpgi12408	CpG island 12408	within coordinates
Gm14123	predicted gene 14123	within coordinates
Rr397381	regulatory region 397381	126 bp upstream
Rr567053	regulatory region 567053	225 bp proximal
Rr567054	regulatory region 567054	265 bp proximal
Rr567055	regulatory region 567055	1036 bp proximal
Rr567056	regulatory region 567056	1718 bp proximal
Tssr26708	transcription start site region 26708	158 bp downstream
Tssr26709	transcription start site region 26709	170 bp downstream