rs27372921 SNP Detail

Summary

• ID
  rs27372921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150450250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGTATCA GAGGTTCCAA
  CAAGGACAAG TCGGGAAGAT GCGTGCAACT AAAGAAAGGC AAAAGGCGTT GGCTCCAGCG
  GCTGGGTGGC AAGAAGGGAC AGAAAAGGTC CACAGCAGCG TGAGGGAGGA CAACCAGGTC
  CACGCAAGGC CTCGCCCCGC AGATTGTCCT GTCAGCCCGA ACCCGGCTCC TGGGTCCAAG
  Y
  CGGGATAATG AGGAGGGTTC TCTCCCGTGG GATGATCCCA GCCCAGGTCC TGCCTACCTG
  CCCTCCTTGA CCTCCGGGAC CTGGCCATCG TCCGTGACGA CCTGCGGCCG CAGGGGCCGA
  CGCTGCCGCA GCCCGTCCGC TTCGCTCATT CTGCCGCCTC TCCACTGACA CCTCCAACAG
  CGCCTTGACA CTCAGCAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37568844	NES08910365	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27372921					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568844	NES08910365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150450250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apmap	adipocyte plasma membrane associated protein			Intron
				Noncoding-Transcript-Variant
Cpgi12408	CpG island 12408			within coordinates
Gm14123	predicted gene 14123			within coordinates
Rr397381	regulatory region 397381			128 bp upstream
Rr567053	regulatory region 567053			227 bp proximal
Rr567054	regulatory region 567054			267 bp proximal
Rr567055	regulatory region 567055			1038 bp proximal
Rr567056	regulatory region 567056			1720 bp proximal
Tssr26708	transcription start site region 26708			160 bp downstream
Tssr26709	transcription start site region 26709			172 bp downstream