rs27372931 SNP Detail

Summary

• ID
  rs27372931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150449360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTCAAA ACACTTTTCT
  TCTCCAAGTG CCCAGATAGG GCTCTCCACA GCTCCACCCT TTCCTAGTTC TCCTAGTTCC
  TGCAGTTAGG TTTGGCCACT CCTTGCTTAT CCATTAAAAG ACTCACCAAC CATTAGCAAT
  TAATTAGCAA TACCCACAAC AAGCAGGGTG AGCAATTTGT CATAATCTAC CCACATTTAG
  Y
  AAGGTGAGTC CTAGTTAATG AGATCTCAAG GCTACCTAGG ATGGCTGGTC TCCCTAATCA
  AGATCCATAC TAGTTAGTAC CTTCCTGTTC TTTTACAAAC TCCTCTTTCC AAAGCCAAAA
  CATGTTTGTA TGTTTATCTT ATTACCATTA GTCAAACCGA TCATCAGAAG CAAAAACTGT
  CTCTCATCTA GTATGCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568854	NES08910354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372931					SNP	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568854	NES08910354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150449360 () rs orientation: forward

Symbol	Name	Function Class
Apmap	adipocyte plasma membrane associated protein	within coordinates
Cpgi12408	CpG island 12408	537 bp proximal
Gm14123	predicted gene 14123	within coordinates
Rr397381	regulatory region 397381	1018 bp upstream
Rr567053	regulatory region 567053	1117 bp proximal
Rr567054	regulatory region 567054	1157 bp proximal
Rr567055	regulatory region 567055	1928 bp proximal
Tssr26708	transcription start site region 26708	1050 bp downstream
Tssr26709	transcription start site region 26709	1062 bp downstream