rs27372939 SNP Detail

Summary

• ID
  rs27372939
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150448563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAAGTCT AAAATTTATT
  CTAACATTGT TTGTTTATAC TTTTTTCAGA TTCCATGCTT TCTTTTTCTT TAATTTTCTA
  CACTGAAAAT CAAGTCCAGG ACCTTGGATG TATTAGGTAA ATGTCCAACC TCTGAACTCC
  CAACTTTCAG ATTTCTTCAC AAAACTTTCC TGATTCATAT TCAATCCTCT ACCCTCACAG
  W
  AGTCAAGAAG ATAGTTGGAC AAACTATTAG AGATGACTAC AAGAAAAAAA ATACAGGAGA
  ACTGCTGAAA ACGACAAACA GGAATGTTAT CACTGTAAGT ATAGAAAGGT GGCTATAACT
  CACTTTAAAA GCAGCCATTT CACCGGGCGG TGGTGGTGCA TGCCTTTAGT CCCAGCACTT
  GGGAGGCAGA GGCAGGCGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568862	NES08910402	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372939					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568862	NES08910402	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150448563 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apmap	adipocyte plasma membrane associated protein			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi12408	CpG island 12408			1334 bp proximal
Gm14123	predicted gene 14123			within coordinates
Rr397381	regulatory region 397381			1815 bp upstream
Rr567053	regulatory region 567053			1914 bp proximal
Rr567054	regulatory region 567054			1954 bp proximal
Tssr26708	transcription start site region 26708			1847 bp downstream
Tssr26709	transcription start site region 26709			1859 bp downstream