rs27372940 SNP Detail

Summary

• ID
  rs27372940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150448397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGATTTT TGATACTGCA
  ACCTCCTGTT ATCATCTACA AAATTCACAC TCTACTGTGC AACAATATTT AGGAAGGAAG
  GGAGGGAGGG AGAGAGAGAG AAAGAGAGAG AGAAATCTAG TAATGTTTTA AGTCAGTTTA
  AGATTTTGTG TTAGGTTTGC AAGTTTTAGC AAGTCTAAAA TTTATTCTAA CATTGTTTGT
  Y
  TATACTTTTT TCAGATTCCA TGCTTTCTTT TTCTTTAATT TTCTACACTG AAAATCAAGT
  CCAGGACCTT GGATGTATTA GGTAAATGTC CAACCTCTGA ACTCCCAACT TTCAGATTTC
  TTCACAAAAC TTTCCTGATT CATATTCAAT CCTCTACCCT CACAGTAGTC AAGAAGATAG
  TTGGACAAAC TATTAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568863	NES08910401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27372940					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568863	NES08910401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150448397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apmap	adipocyte plasma membrane associated protein			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi12408	CpG island 12408			1500 bp proximal
Gm14123	predicted gene 14123			within coordinates
Rr397381	regulatory region 397381			1981 bp upstream