rs27373668 SNP Detail

Summary

• ID
  rs27373668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152948642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG CTGGAGGCCT AAGGCCCTCC
  R
  GGCATCCCTC ACCAACCATC CCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37560693	NES08920930	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	G	A	A	A		G	G	G	G		A
ss147984177	ENSMUSSNP6328196	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
ss320564064	CHEV_2_152932458	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27373668					SNP	A	A	G	G	A	G	G	A	A	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560693	NES08920930	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152948642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	1723 bp proximal
Hck	hemopoietic cell kinase	1746 bp upstream
Rr567550	regulatory region 567550	644 bp proximal
Rr567551	regulatory region 567551	1469 bp proximal
Rr567552	regulatory region 567552	1785 bp proximal
Rr567553	regulatory region 567553	1949 bp proximal
Tssr20863	transcription start site region 20863	934 bp upstream
Tssr20864	transcription start site region 20864	980 bp upstream
Tssr20865	transcription start site region 20865	1752 bp upstream
Tssr20866	transcription start site region 20866	1767 bp upstream