rs27374479 SNP Detail

Summary

• ID
  rs27374479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102627222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGGGAT TTTGAGAAAT
  GAAGCAATTT TTTCTTTCCT GGAGAGTCCC TTGGGGAGTT CCCAACTCAA AGTGCTCATG
  TCCTCATAGA GACAAATGTC ATGAGAAAAA ACATTTCTGT GGAATGTGCC CAACCCAGAA
  GAACCATTCA GAACACTTTG GCTGGGTCTT TTTCCAGTAG CCGCCTTTCT CTCATTCTTT
  Y
  CTCCTCTGCA TCATGCTCAC ACTCAGATGA TGTTCACACC TCTCTCCTGA TAGCTCCAAA
  GAGCAAAACT TGTAAGAAAC TTGAGAGAGC ACCTTGGTCT TGGAGTTTAT CAGTTGCTCC
  ATAATAAATA AATAATAATA AAGTAATAGT GAATATATTA TTTTTAGTGA TTTTCATTTG
  TATTGCTATT TTTATTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575907	NES09076771	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27374479					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575907	NES09076771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102627222 () rs orientation: forward

Symbol	Name	Function Class
Rr397151	regulatory region 397151	1294 bp downstream
Rr561738	regulatory region 561738	1379 bp distal