rs27374488 SNP Detail

Summary

• ID
  rs27374488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102626064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTATGAG CTACCACGTG
  GGTGCTGGGA ATTGAACCCA GGTCCTCTGG AAGAGAAGAA AGTGCTCTTA TCTGCTGAGC
  CATCTCTCCA GCTCTCTTCC TCACAGTTTT GAAAGTTTGG TTAATCCATT CTCTCACTGA
  GGCAGTGAGG GGTCATAGCT CCGCAGTCCC TGTAAGGCAA ACAGCCTAAG TGAGGATCAA
  Y
  GTCCGTGAAA CTTGTCCACA TGATATGAAA ATGATATGAC ATTCACGCTT GGACACACGC
  ACATTTGAAA GCAGAATGAT GTAGTTGGCA AAGTAGACAA AGAAAATGTC TTCCACTGCT
  ATTCCCTCCC TCCTCACCAT TCTTCCGTTA TTTAGGGTAA CAAAATTGTA GTTTTCCACC
  TATTGTCTGG CCGGGGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575916	NES09076788	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27374488					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575916	NES09076788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102626064 () rs orientation: forward

Symbol	Name	Function Class
Rr397151	regulatory region 397151	136 bp downstream
Rr561738	regulatory region 561738	221 bp distal