rs27376290 SNP Detail

Summary

• ID
  rs27376290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102492392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTATAT ATATATATCC
  AGCAAGTGGC CTTTTTAGAA TACTTTCATA GCTTCTGCGT TTGATCTTTG CCATCTTACA
  GAGCATTACT GTCCGGTTAT TTGAAGTTTC TGATTGTGTT TCACTGGGAA CATCAGCATG
  GCTTTTGTAA AACTCAGCAG TGGCTCTCAT AGTTTTCAGG TTCTGAGAAG TGTTTTCCTA
  Y
  AGAAGCAAGG TTCAATTTGA CAGCTGAATG TCTTTTGTTT GTTGTTGCTG CTGCTGCTGT
  TGCTGCTGAG TCCTGGGTGT GACTGGAATC ACTGAGATGG TGGCTTTTAG GTTCCTGACC
  CAAATTGGAA AGAGATTACA AGTCGCTGGT GACAGGCAGG GTTTTGTCTG TTATTGACTG
  GGTCACAGTA GAGTGACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37576912	NES09079738	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27376290					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37576912	NES09079738	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102492392 () rs orientation: forward

Symbol	Name	Function Class
Gm57687	predicted gene, 57687	within coordinates
Rr561716	regulatory region 561716	1971 bp distal
Rr561717	regulatory region 561717	250 bp proximal
Rr561718	regulatory region 561718	825 bp proximal
Rr561719	regulatory region 561719	1849 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates