rs27376291 SNP Detail

Summary

• ID
  rs27376291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102492322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAAATG TCAGTTGTCA
  GTAATGAAAG TGTGAGCCCT GGATGGTGCC TATTGTTGGC TTTTTTGGAA ATCTTTATAT
  ATATATATCC AGCAAGTGGC CTTTTTAGAA TACTTTCATA GCTTCTGCGT TTGATCTTTG
  CCATCTTACA GAGCATTACT GTCCGGTTAT TTGAAGTTTC TGATTGTGTT TCACTGGGAA
  Y
  ATCAGCATGG CTTTTGTAAA ACTCAGCAGT GGCTCTCATA GTTTTCAGGT TCTGAGAAGT
  GTTTTCCTAT AGAAGCAAGG TTCAATTTGA CAGCTGAATG TCTTTTGTTT GTTGTTGCTG
  CTGCTGCTGT TGCTGCTGAG TCCTGGGTGT GACTGGAATC ACTGAGATGG TGGCTTTTAG
  GTTCCTGACC CAAATTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37576913	NES09079737	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C		C	T		T	C	C	T		C
ss45217350	mCV23733844	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss147119864	ENSMUSSNP2257544	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss320439921	CHEV_2_102502134	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27376291					SNP	C	C	T	C	C	C	C	C	C	C	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37576913	NES09079737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102492322 () rs orientation: forward

Symbol	Name	Function Class
Gm57687	predicted gene, 57687	within coordinates
Rr561716	regulatory region 561716	1901 bp distal
Rr561717	regulatory region 561717	320 bp proximal
Rr561718	regulatory region 561718	895 bp proximal
Rr561719	regulatory region 561719	1919 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates