rs27376293 SNP Detail

Summary

• ID
  rs27376293
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102492158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTACAAC AAAATGTTAT CTTTCCAGGA TGATTCTGGG
  ATTTGGCATA GCTTTGGGGT ATCATCTGGA AATGTCAGTT GTCAGTAATG AAAGTGTGAG
  S
  CCTGGATGGT GCCTATTGTT GGCTTTTTTG GAAATCTTTA TATATATATA TCCAGCAAGT
  GGCCTTTTTA GAATACTTTC ATAGCTTCTG CGTTTGATCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss37576915	NES09079735	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs27376293					SNP	G	G	G	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37576915	NES09079735	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102492158 () rs orientation: forward

Symbol	Name	Function Class
Gm57687	predicted gene, 57687	within coordinates
Rr561716	regulatory region 561716	1737 bp distal
Rr561717	regulatory region 561717	484 bp proximal
Rr561718	regulatory region 561718	1059 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates