rs27376294 SNP Detail

Summary

• ID
  rs27376294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102492075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGTTCA CGTTGCCACC
  AACAGCATAT GCTAATTACT CCTTTTTTTG TCGAATTATT AGAGGCAACG GATACAGTTC
  TTTAGCACTC TTTTCAAAGC TCATTTGTAT ATTTTTACAT TCACTTCTTT CAATAGCTGC
  ATGAAGTAAG CGAGCCAGTG AAATAGACTT GAAAGCTCAA AACTGTGTAC AACAAAATGT
  Y
  ATCTTTCCAG GATGATTCTG GGATTTGGCA TAGCTTTGGG GTATCATCTG GAAATGTCAG
  TTGTCAGTAA TGAAAGTGTG AGCCCTGGAT GGTGCCTATT GTTGGCTTTT TTGGAAATCT
  TTATATATAT ATATCCAGCA AGTGGCCTTT TTAGAATACT TTCATAGCTT CTGCGTTTGA
  TCTTTGCCAT CTTACAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37576916	NES09079734	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		T	C		C	T	T	C		T
ss45220572	mCV23733831	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss147119845	ENSMUSSNP810420	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320439918	CHEV_2_102501887	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27376294					SNP	T	T	C	T	T	T	T	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37576916	NES09079734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102492075 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11978	CpG island 11978			1975 bp distal
Gm57687	predicted gene, 57687			within coordinates
Rr561716	regulatory region 561716			1654 bp distal
Rr561717	regulatory region 561717			567 bp proximal
Rr561718	regulatory region 561718			1142 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2			Intron
				Noncoding-Transcript-Variant