rs27376295 SNP Detail

Summary

• ID
  rs27376295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102492001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTCAGC TCAGCTCCGG
  GATGCTGGGG TAATGGGGTG GTATATTAAA CCAATCGATC TGGGGACTGT TCATCTGGTG
  TTCACGTTGC CACCAACAGC ATATGCTAAT TACTCCTTTT TTTGTCGAAT TATTAGAGGC
  AACGGATACA GTTCTTTAGC ACTCTTTTCA AAGCTCATTT GTATATTTTT ACATTCACTT
  Y
  TTTCAATAGC TGCATGAAGT AAGCGAGCCA GTGAAATAGA CTTGAAAGCT CAAAACTGTG
  TACAACAAAA TGTTATCTTT CCAGGATGAT TCTGGGATTT GGCATAGCTT TGGGGTATCA
  TCTGGAAATG TCAGTTGTCA GTAATGAAAG TGTGAGCCCT GGATGGTGCC TATTGTTGGC
  TTTTTTGGAA ATCTTTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37576917	NES09079733	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	T		T	C	C	T		C
ss45214193	mCV23733830	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss147119840	ENSMUSSNP355677	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320439917	CHEV_2_102501813	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27376295					SNP	C	C	T	C	C	C	C	C	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37576917	NES09079733	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102492001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	1901 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561716	regulatory region 561716	1580 bp distal
Rr561717	regulatory region 561717	641 bp proximal
Rr561718	regulatory region 561718	1216 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates