rs27376296 SNP Detail

Summary

• ID
  rs27376296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102491799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGAGAT CTGTTGGCCC
  CTTCTGATAT CTTTGGGTAA TGCACCTTGT AACAGAAACC CAGGAAGCAT CTCCAGGATG
  GTCTCTTTTG TCAGCCTTTG TCTTCTAACA ATATTAAAGC TGTTTTTTTT TTTCTGAAAT
  ATACATTGCT TATAAGGATA CAGAAATAGC AATGTAATTA CATGCTTTCG GTTTATAGAC
  R
  TTCAGCTCAG CTCAGCTCCG GGATGCTGGG GTAATGGGGT GGTATATTAA ACCAATCGAT
  CTGGGGACTG TTCATCTGGT GTTCACGTTG CCACCAACAG CATATGCTAA TTACTCCTTT
  TTTTGTCGAA TTATTAGAGG CAACGGATAC AGTTCTTTAG CACTCTTTTC AAAGCTCATT
  TGTATATTTT TACATTCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37576918	NES09079732	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	G	A	G		G	A	A	G		A
ss320439916	CHEV_2_102501611	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27376296					SNP	A	G	A	A	A	A	G	A	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37576918	NES09079732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102491799 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	1699 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561716	regulatory region 561716	1378 bp distal
Rr561717	regulatory region 561717	843 bp proximal
Rr561718	regulatory region 561718	1418 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates