rs27378274 SNP Detail

Summary

• ID
  rs27378274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102285988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCACAAG TCAACCCCTC
  CTTCCAGGAG ATGGAAGCAA GATTGTAAGT TTAAGGCCAG CCTGAGTTAA ATGGTGAGAC
  CCTGTCTTAA TAATAAAGCA AGACACTCCA AAATAAACAG AAAGAAGAGA GGGAAAAGAG
  GGTCCTTGAA GTTTACTCTG ATCCCAAAGT GATTCCATGA CTCCAATGTT GGCCAATACT
  R
  CTGACCTTGC CCAGCTTTCT AACTCGCAGC TACAATTCCA TTGTTTGTGC TGTTATGAGC
  TGGGTGGCTG TGTTCCCTCC AGGCTTAAGT ATTGAATTCT CAACCCTAAT GCCACTGTAT
  TAGCTGCAGG GCCCTCTGGA AAGTGACTGG ATCATAAAAG TCATGATCTC CTCGTGAATA
  GGATTAATGT CTTTGTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577801	NES09065837	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	G		G	A	G		A
ss320437776	CHEV_2_102295800	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27378274					SNP	A	G	A	A	A	A	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577801	NES09065837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102285988 () rs orientation: forward

Symbol	Name	Function Class
Rr561697	regulatory region 561697	1805 bp distal