rs27378278 SNP Detail

Summary

• ID
  rs27378278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102284778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCTTTAA CAGTCAAAAT
  GCAGAACTGC AGAAAACAGA GGGATAAGCT AGAGAAAGCA AGCACACACA CACACACACA
  CACACACACA CACACACACA CACACACACA AACACACCCT GCAGAGTGGT ATGCCGTTTG
  AGTTATAGCA ATGTTTGATT ATTTTAGACA GTGTTTATAG AACCTGCCTC TGCTTTCCTG
  Y
  TAGCTGACTG CCCTTGTAGC TCCTTAGATT TGAAGCCTGA AGACAGCAAG CACCCCTGCA
  TTCTCTGGGG CTCTGAGATG GGGAAACATC ATCTCTTTAG ACCTTCAGCA GTTGCGTAGG
  GATCCCCAAA TAAGAACCTA TTTTCTCTTT TAAGAATCTC TTAGTACTCC TTAAGCTTAG
  ACCTCCAATA TATTCACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37577805	NES09065914	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C		C	C		C
ss45261273	mCV23728631	ABI	CRAMUS_MOUSE	f	SNP			T					C
ss147112379	ENSMUSSNP2909803	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss320437767	CHEV_2_102294590	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27378278					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577805	NES09065914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102284778 () rs orientation: forward

Symbol	Name	Function Class
Rr561696	regulatory region 561696	1844 bp distal
Rr561697	regulatory region 561697	595 bp distal
Rr561698	regulatory region 561698	842 bp distal