rs27378279 SNP Detail

Summary

• ID
  rs27378279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102284729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTAGCCC TAGGCCCGAG
  TGTACTCATG ACCAGGATGA GATGTATGAA GCGCTTTAAC AGTCAAAATG CAGAACTGCA
  GAAAACAGAG GGATAAGCTA GAGAAAGCAA GCACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAA ACACACCCTG CAGAGTGGTA TGCCGTTTGA GTTATAGCAA
  Y
  GTTTGATTAT TTTAGACAGT GTTTATAGAA CCTGCCTCTG CTTTCCTGCT AGCTGACTGC
  CCTTGTAGCT CCTTAGATTT GAAGCCTGAA GACAGCAAGC ACCCCTGCAT TCTCTGGGGC
  TCTGAGATGG GGAAACATCA TCTCTTTAGA CCTTCAGCAG TTGCGTAGGG ATCCCCAAAT
  AAGAACCTAT TTTCTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577806	NES09065913	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T		T	T	C		C	T	T	C		T
ss45319875	mCV23728620	ABI	CRAMUS_MOUSE	f	SNP			C				T
ss147112368	ENSMUSSNP784368	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss320437765	CHEV_2_102294541	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27378279					SNP	T	T	C	T	T	T	T	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577806	NES09065913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102284729 () rs orientation: forward

Symbol	Name	Function Class
Rr561696	regulatory region 561696	1795 bp distal
Rr561697	regulatory region 561697	546 bp distal
Rr561698	regulatory region 561698	793 bp distal