rs27378280 SNP Detail

Summary

• ID
  rs27378280
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102284632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGCCCTAG GCCCGAGTGT ACTCATGACC AGGATGAGAT
  GTATGAAGCG CTTTAACAGT CAAAATGCAG AACTGCAGAA AACAGAGGGA TAAGCTAGAG
  M
  AAGCAAGCAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACAAACAC
  ACCCTGCAGA GTGGTATGCC GTTTGAGTTA TAGCAATGTT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37577807	NES09065912	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27378280					SNP	C	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577807	NES09065912	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102284632 () rs orientation: forward

Symbol	Name	Function Class
Rr561696	regulatory region 561696	1698 bp distal
Rr561697	regulatory region 561697	449 bp distal
Rr561698	regulatory region 561698	696 bp distal