rs27378281 SNP Detail

Summary

• ID
  rs27378281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102284524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGAAAA AATAATATTG
  GTGAGGGACT GAATGTGAGG GGAGCAAGAT TATTAGTCTG GGAAAGTCCA CTTTAATACC
  AGCCACTCCA AGTTCCAGAC TCTCACAGTC ACACTAAGGG TACTGATGAA AGGAGGCGTG
  AAGAGCCAGG CTAAGATCTC ATGTCTCAGA TGATGAGTGG ACTTCATGTT TGAGCCCCAG
  R
  ACCAGACTTA GCCCTAGGCC CGAGTGTACT CATGACCAGG ATGAGATGTA TGAAGCGCTT
  TAACAGTCAA AATGCAGAAC TGCAGAAAAC AGAGGGATAA GCTAGAGAAA GCAAGCACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACAAACACAC CCTGCAGAGT
  GGTATGCCGT TTGAGTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577808	NES09065911	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A		A	A	G		G	A	A	G		A
ss45221002	mCV23728619	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss147112363	ENSMUSSNP351642	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
ss320437763	CHEV_2_102294336	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27378281					SNP	A	G	A	A	A	A	A	A	A	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577808	NES09065911	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102284524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	1899 bp distal
Rr561696	regulatory region 561696	1590 bp distal
Rr561697	regulatory region 561697	341 bp distal
Rr561698	regulatory region 561698	588 bp distal