rs27378283 SNP Detail

Summary

• ID
  rs27378283
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102284071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCCCC CTGCATTGAG
  TTTAGTGTGG GCAAACTGTA AGCAAGATCT CCACCTTGTG GGCATAATCA GAATATCCTC
  TAATTAGAGA ACTACATTTT ATAGTGGTGA TTAAGTTAAA CTCAGAACAC TAAATGCCAC
  CGTGGGCCAA GTTATGTCCC GAGGGCAGCG GGGCAATTCA CAGTGCTTGG TGACTCTGTG
  S
  TTTTGGCTCT TGGCAGAATC TGTGACTGTG TAGTGCCTAG TGACCCACTA TGGTACCCTG
  CATGGGGAGT TCTCTTGCCC ACTGTGTAAC AGTGGCCAGG GCACAAAGCC TGGCACTGAG
  CGCATATTCA GCAATGATGC AATGATTCAC CTAGAACGAG ATGAAGCTTT TCAAGTAGCA
  TCATCACGTT TGTTTGTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577810	NES09065909	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	G		G	G	C		C	G	G	C		G
ss45316301	mCV23728597	ABI	CRAMUS_MOUSE	f	SNP	G	C					G
ss147112343	ENSMUSSNP5867029	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
ss320437759	CHEV_2_102293883	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27378283					SNP	G	C	G	G	G	G	G	G	G	C	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577810	NES09065909	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102284071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	1446 bp distal
Fjx1	four jointed box 1	1934 bp upstream
Rr561696	regulatory region 561696	1137 bp distal
Rr561697	regulatory region 561697	within coordinates
Rr561698	regulatory region 561698	135 bp distal
Tssr25397	transcription start site region 25397	1952 bp upstream
Tssr25398	transcription start site region 25398	1911 bp upstream
Tssr25399	transcription start site region 25399	1883 bp upstream