rs27378285 SNP Detail

Summary

• ID
  rs27378285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCTGTG TATATTTATT
  CTGGAGTTAT AGGGTAGACA ATGTAAAATG TTTGTGACAG AGTAGATACA TTAACCTTCC
  AAAACATGGC TGACCCAAGG CATACACCTT CCTGGGTTTC TTTCCCACTG GTACCTTGTG
  TGCCACCTGA AAGTGTGGGG TCTTTCTTAA ATGTGTTCCC AACCACGGGG CTTCTTGTAG
  Y
  GCTTATCTGA TAAAAGGATT ACAGTGCCTT CCATATGGAT CCAGTACAAT ATATTAATTC
  ATTAAAAAGT TTTTTTTTCT TGCCTCATGC AAGCTTCCCC CTGTCTTTCC CTAGAGAGCA
  GGGACTGTCT CTTATCAAAT TTTTATTTCA TATACCAGCT AATATAGTAT ATTACATGAA
  ATAAGAACTG GATTCATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577812	NES09065907	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	C		C	T	T	C		T
ss320437755	CHEV_2_102293446	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27378285					SNP	T	C	T	T	T	T	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577812	NES09065907	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	1009 bp distal
Fjx1	four jointed box 1	1497 bp upstream
Rr561695	regulatory region 561695	1945 bp distal
Rr561696	regulatory region 561696	700 bp distal
Rr561697	regulatory region 561697	154 bp proximal
Rr561698	regulatory region 561698	281 bp proximal
Tssr25397	transcription start site region 25397	1515 bp upstream
Tssr25398	transcription start site region 25398	1474 bp upstream
Tssr25399	transcription start site region 25399	1446 bp upstream