rs27378286 SNP Detail

Summary

• ID
  rs27378286
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTACAGC CAGAGTTTAA
  AATCGGTTTC TTTCACATTG TGTGTGTGTA TGTGTGTGTG TGTGTGTGTG TGTTTCCTTT
  CCCTATATTC CTCTCCTGGG AACACATGCG AGGTTTCAGC TGGGCTACAT CTGCCTGTGC
  TGTGTATATT TATTCTGGAG TTATAGGGTA GACAATGTAA AATGTTTGTG ACAGAGTAGA
  W
  ACATTAACCT TCCAAAACAT GGCTGACCCA AGGCATACAC CTTCCTGGGT TTCTTTCCCA
  CTGGTACCTT GTGTGCCACC TGAAAGTGTG GGGTCTTTCT TAAATGTGTT CCCAACCACG
  GGGCTTCTTG TAGTGCTTAT CTGATAAAAG GATTACAGTG CCTTCCATAT GGATCCAGTA
  CAATATATTA ATTCATTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577813	NES09065906	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T	A		A	T	A		T
ss147112328	ENSMUSSNP1419210	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				T
ss320437753	CHEV_2_102293312	CHEVERUD	SCREENING_POP	f	SNP								A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27378286					SNP	T	A	T	T	T	T	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577813	NES09065906	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	875 bp distal
Fjx1	four jointed box 1	1363 bp upstream
Rr561695	regulatory region 561695	1811 bp distal
Rr561696	regulatory region 561696	566 bp distal
Rr561697	regulatory region 561697	288 bp proximal
Rr561698	regulatory region 561698	415 bp proximal
Tssr25397	transcription start site region 25397	1381 bp upstream
Tssr25398	transcription start site region 25398	1340 bp upstream
Tssr25399	transcription start site region 25399	1312 bp upstream