rs27378656 SNP Detail

Summary

• ID
  rs27378656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103593766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCCAGA TCATACCGAC
  TAAGTCATAT ATTTATCATT AACCACACAG TTGAACCATG CCACTTACTA CACACATCTG
  GGGTCACTCC AGTGTCTTGA GGGGTAATTT TTTCACCACT GAATAGTTAA CACTGGCCAT
  AATGCCAAGC AAGAGATACC CAAATGTGCT AATAAATTTC AGGTTGTCTC GCTAAAGAGA
  Y
  ATAGTATTTA GAGGAAATTA AGACTTACAA ATAAATATAC CAAAACCTGA CTTTAAGTTT
  TAAGTACATC AGGGATACTG CTATTTTCAA TGCCAACGGT GAAGGATCAA GGCTATGCAG
  GAAACTGCTC AAGCTTCACA ACAGACTATT AATGTACAGT GCTAACATAC AGTAGTCTAG
  CTTTGTTCTT AAAAAGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571882	NES09064714	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27378656					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571882	NES09064714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103593766 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	within coordinates
Cpgi11984	CpG island 11984	1883 bp distal
Gm75186	predicted gene, 75186	within coordinates
Rr55318	regulatory region 55318	965 bp distal
Rr367263	regulatory region 367263	1923 bp downstream
Tssr19170	transcription start site region 19170	1995 bp downstream
Tssr19171	transcription start site region 19171	1936 bp downstream