rs27378657 SNP Detail

Summary

• ID
  rs27378657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103593440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGGATT ACATTTGCCC
  ATAAACTTTT GTTCTAAACA CTGCAGTGAA GATCTTTTAA ATGGCAGTTT TATTAGATGA
  CCCACTATTC TGGCCACCCC CCCCCCAAAA AAAAACAATA CACACCATTT TAAAACCTTC
  AATAGCTTCC AAATGTTGAG ACAAAAACTA AACATGGAAG AAAACTGCCC TATCCAGTTT
  Y
  CCCAGACAGA TCTTGCTAAT GCTTAAACAA AACAGGAGTC ACTGGAATAC AGGTCTCTTG
  ACTCTTTTAT CCAGTTTGCC ACTCCTCACT CATCCTTATG TCAGCTGAAT TATCTTTCAA
  TCAAGTCTTT CCAGATCATA CCGACTAAGT CATATATTTA TCATTAACCA CACAGTTGAA
  CCATGCCACT TACTACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37571883	NES09064713	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27378657					SNP	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571883	NES09064713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103593440 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	within coordinates
Cpgi11984	CpG island 11984	1557 bp distal
Gm75186	predicted gene, 75186	within coordinates
Nat10	N-acetyltransferase 10	1825 bp upstream
Rr55318	regulatory region 55318	639 bp distal
Rr367263	regulatory region 367263	1597 bp downstream
Tssr19170	transcription start site region 19170	1669 bp downstream
Tssr19171	transcription start site region 19171	1610 bp downstream
Tssr25492	transcription start site region 25492	1923 bp upstream
Tssr25493	transcription start site region 25493	1809 bp upstream