rs27378660 SNP Detail

Summary

• ID
  rs27378660
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103592217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACTAAAA GCCCAACATT
  GGGTCTCAAA GCTCATCCAA CCACATCCAC AAGGATACCC GTAAGTATGT CTGCTTTCCT
  TTTAGCATGA GCCACGTGAA ATCGGTTTAT CCTATATTTT TGGGCACAAG TTCTGTTATC
  TAAAACGAAT TCCTTCCCCA AATTTACGCA CCAACTTCAA TATCAATCTA AATTTCAATG
  S
  ACTTTAAAGA CTTCATGATG CCTAGCCATA TTGTTTTAAG TCACCAATAC AGCCCTAGAC
  TTAATACTAA GGTTCTAAAT GCACTTAAGA AAATAAAACT ACCAGTACTT TGTTATAATG
  GGCAGACAAG TCCTATAAGG TGGTGGTGAC ACAAGCAAAA CACAAAACTT AGAAATAATG
  ACCCTTGTGA GTACTCGACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37571886	NES09064754	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27378660					SNP	G	G	G	G	G	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571886	NES09064754	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103592217 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	1075 bp downstream
Cpgi11984	CpG island 11984	334 bp distal
Gm75186	predicted gene, 75186	within coordinates
Nat10	N-acetyltransferase 10	602 bp upstream
Rr55318	regulatory region 55318	within coordinates
Rr367263	regulatory region 367263	374 bp downstream
Tssr19170	transcription start site region 19170	446 bp downstream
Tssr19171	transcription start site region 19171	387 bp downstream
Tssr25490	transcription start site region 25490	931 bp upstream
Tssr25491	transcription start site region 25491	782 bp upstream
Tssr25492	transcription start site region 25492	700 bp upstream
Tssr25493	transcription start site region 25493	586 bp upstream