rs27378661 SNP Detail

Summary

• ID
  rs27378661
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103591814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG CTATGTTGAA AAAAACCTCT
  W
  TAGCAGGGTT GTACAAGGCA ATAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37571887	NES09064753	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	A		A	T	A	A	A	A
ss45363855	mCV24889860	ABI	CRAMUS_MOUSE	f	SNP		A	T					A		T
ss147138782	ENSMUSSNP2795965	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27378661					SNP	A	A	T	T	T	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571887	NES09064753	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103591814 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	1478 bp downstream
Cpgi11984	CpG island 11984	within coordinates
Gm75186	predicted gene, 75186	within coordinates
Nat10	N-acetyltransferase 10	199 bp upstream
Rr55318	regulatory region 55318	within coordinates
Rr367263	regulatory region 367263	within coordinates
Tssr19170	transcription start site region 19170	43 bp downstream
Tssr19171	transcription start site region 19171	8 bp upstream
Tssr25490	transcription start site region 25490	528 bp upstream
Tssr25491	transcription start site region 25491	379 bp upstream
Tssr25492	transcription start site region 25492	297 bp upstream
Tssr25493	transcription start site region 25493	183 bp upstream