rs27378662 SNP Detail

Summary

• ID
  rs27378662
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103591699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCTACG CCGGGGCCGC
  CGCTGCACGT GAATCCGCTT AAGTGGCAGA CAGCACGTGG GCAAGTGCTC AGAAGGGAGG
  GGACCACTAC AGCTATGGGA CCTTCCATGG CTTCGACGCT TAGTGATGAC GTAAGAACAC
  GCCGCGGATC TCCGCTACGC TTGCGCACTA ACTCCCGGCC GCCATTTCGC CATTTGCTGC
  S
  GGTAACCTGG CTATGACAGG CGGAAGTAAT CGTTTAGATA TCCGGGTGTC TCGCATTTGC
  CGTTGCCACT GGTACAGGAA CTCGTCCACT GTTGCTATGT TGAAAAAAAC CTCTATAGCA
  GGGTTGTACA AGGCAATAGC TGTTGCTAGC GTAGGTGTTG TTTTATCGAC CTCCCTACTT
  TTATATGAAA CTAGCCCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37571888	NES09064752	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27378662					SNP	G	G	G	G	G	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571888	NES09064752	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103591699 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	1593 bp downstream
Cpgi11984	CpG island 11984	within coordinates
Gm75186	predicted gene, 75186	32 bp upstream
Nat10	N-acetyltransferase 10	84 bp upstream
Rr55318	regulatory region 55318	within coordinates
Rr367263	regulatory region 367263	within coordinates
Tssr19170	transcription start site region 19170	59 bp upstream
Tssr19171	transcription start site region 19171	123 bp upstream
Tssr25490	transcription start site region 25490	413 bp upstream
Tssr25491	transcription start site region 25491	264 bp upstream
Tssr25492	transcription start site region 25492	182 bp upstream
Tssr25493	transcription start site region 25493	68 bp upstream